Blog Archives

Create SLURM launchers for Koko

launcher_creator.py is a convenience utility that automates creating a launcher for FAU clusters based on parameters (and commands) you give it. This tool and most of the following document is based on posts created at TACC. (https://wikis.utexas.edu/display/bioiteam/launcher_creator.py) launcher_creator.py outputs a

Posted in Academic Resources, How-To-Guides

Home Directories Beta

Koko’s home directories are accessible from most FAU networks (except dorms and wireless) via Microsoft Windows File Share. To connect connect to the Koko Data Transfer nodes from Explorer or the Start Menu. If prompted for a user name and

Posted in How-To-Guides

Perfsonar

We are happy to report that we are working on deploying Perfsonar nodes to aide in the measurement of network metrics. The following test nodes are currently online and being developed. https://perfsonar-research.hpc.fau.edu (131.91.171.216) https://perfsonar-bhric.hpc.fau.edu (131.91.171.215) https://perfsonar-eng.hpc.fau.edu

Posted in How-To-Guides, HPC

Ansys

Ansys is installed on KoKo and may be accessed using the latest ansys module. The module will detect group membership and point users at the most correct license server. At this time only College of Engineering and Computer Science students

Posted in How-To-Guides

LAMMPS

LAMMPS may be run by loading the lmp_openmpi module and the openmpi/gcc module module load lmp_openmpi module load openmpi/gcc lmp_openmpi Note: We have seen that this is printing a warning message when starting. We are debugging but are interested to

Posted in How-To-Guides, HPC

X2Go

X2Go enables users to access a graphical desktop over low or high bandwidth connections. It provides a remote desktop solution tunneled over SSH supporting file and printer sharing. We recommend that users install the latest version of X2Go by downloading it

Posted in How-To-Guides

APL

GNU APL is installed to KoKo and may be loaded using the module command. module load gnu/apl

Posted in How-To-Guides

R

R has been installed to KoKo and may be loaded using the modules command. module load R

Posted in How-To-Guides

FAU Slurm Queues

We provide several queues for submitting HPC. All compute nodes have been updated to Scientific Linux 7 and the partition/queue names have been changed to reflect this. shortq7 Minimum of 1 process Maximum of 30 nodes Maximum run time 2 hours

Posted in HPC

Submitting Jobs

Upload your job to your KoKo home directory using Globus, Filezilla or SCP. Create a script named {JOBNAME}.sh to start your job containing the following: #!/bin/sh #SBATCH – – partition=shortq #SBATCH – – ntasks=1 #SBATCH – – mem-per-cpu=1024 #SBATCH –

Posted in How-To-Guides, HPC