Blog Archives

Fastqc

Fastqc is a quality control tool for high throughput sequence data. It may be started from a remote desktop session on koko-login.hpc.fau.edu using the following terminal commands. Batch Job: Create a file named fastqc.sh and paste the following into it.

Posted in How-To-Guides, HPC

OVirt Remote Viewer

Users of Ovirt may wish to utilize the Remote Viewer as it provided improved usability. The following page provides instructions for several operating systems. Windows: Install https://virt-manager.org/download/sources/virt-viewer/virt-viewer-x64-8.0.msi Mac OS: Install homebrew the missing package manager for Mac OS X. (https://brew.sh/)

Posted in How-To-Guides

Engineering Queue GPU’s

The College of Engineering donated some servers to the cluster primary for the use of Engineering Students. As these machines require some custom configuration they must be accessed with their own partitions. Partitions:  Public: shortq7-eng-gpu Private: longq7-eng-gpu (only members of

Posted in HPC

Password Sync

If you have changed your NETID password you will need to sync it up by visiting https://access.hpc.fau.edu/rc. This tool will push the password to any Research Computing systems that you have access to.

Posted in How-To-Guides, Support Posts

Miniconda (small anaconda)

For researchers who have Python or R package requirements beyond the common packages (e.g. Numby, Scipy, Pandas, BioConda, R) we recommend using Anaconda. Using Anaconda’s package manager allows the creation and management of packages and environments. Using conda you can

Posted in How-To-Guides

Running Jupyter with SciKit-learn

For more information on Scikit check out (https://scikit-learn.org/) First start your Jupyter server using the short process: Open https://notebooks.hpc.fau.edu Click “Login” Click “Login to Jupyter” Enter your username and password. Click “Login” Click “New Server” Click “New” -> “Terminal” Enter

Posted in How-To-Guides

Linux VPN

Florida Atlantic University VPN for Linux For Linux, the Juniper Network Connect client has been deprecated VPN connectivity can be accomplished through use of the Pulse Secure Client for Linux. Currently only Centos/RHEL and Debian/Ubuntu flavors of Linux are supported by the

Posted in How-To-Guides

Create SLURM launchers for Koko

launcher_creator.py is a convenience utility that automates creating a launcher for FAU clusters based on parameters (and commands) you give it. This tool and most of the following document is based on posts created at TACC. (https://wikis.utexas.edu/display/bioiteam/launcher_creator.py) launcher_creator.py outputs a

Posted in Academic Resources, How-To-Guides

Home Directories Beta

Koko’s home directories are accessible from most FAU networks (except dorms and wireless) via Microsoft Windows File Share. To connect connect to the Koko Data Transfer nodes from Explorer or the Start Menu. If prompted for a user name and

Posted in How-To-Guides

Perfsonar

We are happy to report that we are working on deploying Perfsonar nodes to aide in the measurement of network metrics. The following test nodes are currently online and being developed. https://perfsonar-research.hpc.fau.edu (131.91.171.216) https://perfsonar-bhric.hpc.fau.edu (131.91.171.215) https://perfsonar-eng.hpc.fau.edu

Posted in How-To-Guides, HPC