The fastest and easiest way to transfer files between Koko and HiPerGator is to use Globus (https://globus.org) Once connected to Globus.org You can use the following service names to transfer. UF HiPerGator: UFRC HiPerGatorFAU Koko: fauhpc#koko
Blog Archives
Upgrading Tensorflow
Upgrading Tensorflow in your profile is fairly easy just execute the following command to update to the latest version available for your current version of Python. pip3 install –upgrade –user tensorflow If you need to update your Python version you…
Posted in HPC
Requesting access to HiPerGator
Requesting a UF Gator link account. Request an FAU Research Computing (link) Request a UF account (Gator link) and enroll in 2FA (link) Enter Rhian Resnick as the sponsor. Enter rresnick@fau.edu as the sponsor(s) email addresses. Once you have been granted…
Accounting and Job History Retrieval
Slurms job records can show information including memory usage, time start and end, and other details about your jobs submitted to the cluster. This can be helpful for creating a more efficient resource allocation to your jobs or help with…
Posted in HPC
Keygen for koko-login
For Windows: To generate a key pair use PuTTY’s generation tool called “PuTTYgen” Once Launched make sure RSA is selected in the bottom left, then click “Generate” Move your mouse around the blank area near the progress bar to add…
Posted in HPC
Fastqc
Fastqc is a quality control tool for high throughput sequence data. It may be started from a remote desktop session on koko-login.hpc.fau.edu using the following terminal commands. Batch Job: Create a file named fastqc.sh and paste the following into it.…
Posted in How-To-Guides, HPC
How To Run Sagemath
connect to cocalc.hpc.fau.edu on any web browser Enter your fau username and password Click “New” and then “Sagemath 9.0” …
Posted in HPC
Engineering Queue GPU’s
The College of Engineering donated some servers to the cluster primary for the use of Engineering Students. As these machines require some custom configuration they must be accessed with their own partitions. Partitions: Public: shortq7-eng-gpu Private: longq7-eng-gpu (only members of…
Posted in HPC
Running RStudio
RStudio is an Integrated Development Environment (IDE) for R. It includes a console, syntax highlighting editor that supports direct code execution, as well as tools for plotting, debugging, history and workspace management. For more information see RStudio webpage. To run RStudio, first open…
Posted in How-To-Guides, HPC
Running Matlab + GPU via Command Line
New HPC Cluster koko-login.hpc.fau.edu [fauowl@koko-login1 ~]$ srun –pty –gres gpu bash[fauowl@nodeamd014 ~]$ module load matlab-R2019b-gcc-8.3.0-srkjgbh[fauowl@nodeamd014 ~]$ module load cuda-9.0.176-gcc-8.3.0-533rw6k[fauowl@nodeamd014 ~]$ matlabMATLAB is selecting SOFTWARE OPENGL rendering. < M A T L A B (R) >Copyright 1984-2019 The MathWorks, Inc.R2019b (9.7.0.1190202)…
Posted in HPC