A bit of bat script to set snmp v3 on your ESXI cluster set PATH=%PATH%;C:\Program Files (x86)\VMware\esxcli\ set VCASERVER=vca.example.com set VCAUSERNAME=VCENTERUSERNAME set VCENTERPASSWORD=VCENTERPASSWORD set VCENTERFINGERPRINT=EE:EE:FF:FF:FF:EE:EE:FF:FF:FF:EE:EE:FF:FF:FF:EE:EE:FF:FF:FF REM Replace “-d” with your ssl finger print set ESX=esxcli.exe -s %VCASERVER% -u %VCAUSERNAME% -p…
Blog Archives
Hadoop on newest version of KoKo
Running Hadoop on the HPC cluster Version 3.0 now requires the use of MyHadoop. The following example will create a four node hadoop instance and run a sample program. #!/bin/bash ################################################################################ # slurm.sbatch – A sample submit script for SLURM that…
Posted in How-To-Guides
Fastqc
Fastqc is a quality control tool for high throughput sequence data. It may be started from a remote desktop session on koko-login.hpc.fau.edu using the following terminal commands. Batch Job: Create a file named fastqc.sh and paste the following into it.…
Posted in How-To-Guides, HPC
OVirt Remote Viewer
Users of Ovirt may wish to utilize the Remote Viewer as it provided improved usability. The following page provides instructions for several operating systems. Windows: Install https://virt-manager.org/download/sources/virt-viewer/virt-viewer-x64-8.0.msi Mac OS: Install homebrew the missing package manager for Mac OS X. (https://brew.sh/)…
Posted in How-To-Guides
Password Sync
If you have changed your NETID password you will need to sync it up by visiting https://access.hpc.fau.edu/rc. This tool will push the password to any Research Computing systems that you have access to.
Posted in How-To-Guides, Support Posts
Running RStudio
RStudio is an Integrated Development Environment (IDE) for R. It includes a console, syntax highlighting editor that supports direct code execution, as well as tools for plotting, debugging, history and workspace management. For more information see RStudio webpage. To run RStudio, first open…
Posted in How-To-Guides, HPC
Miniconda (small anaconda)
For researchers who have Python or R package requirements beyond the common packages (e.g. Numby, Scipy, Pandas, BioConda, R) we recommend using Anaconda. Using Anaconda’s package manager allows the creation and management of packages and environments. Using conda you can…
Posted in How-To-Guides
Running Jupyter with SciKit-learn
For more information on Scikit check out (https://scikit-learn.org/) First start your Jupyter server using the short process: Open https://notebooks.hpc.fau.edu Click “Login” Click “Login to Jupyter” Enter your username and password. Click “Login” Click “New Server” Click “New” -> “Terminal” Enter…
Posted in How-To-Guides
Linux VPN
Florida Atlantic University VPN for Linux For Linux, the Juniper Network Connect client has been deprecated VPN connectivity can be accomplished through use of the Pulse Secure Client for Linux. Currently only Centos/RHEL and Debian/Ubuntu flavors of Linux are supported by the…
Posted in How-To-Guides
Sample SBATCH script
Jobs can be submitted to Koko through two methods, SRUN and SBATCH scripts. We have listed a few sample SBATCH scripts to assist users in building their own scripts to submit jobs. Please see our website here for partition information.…
Posted in How-To-Guides, Support Posts