Fastqc is a quality control tool for high throughput sequence data. It may be started from a remote desktop session on koko-login.hpc.fau.edu using the following terminal commands. Batch Job: Create a file named fastqc.sh and paste the following into it.…
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OVirt Remote Viewer
Users of Ovirt may wish to utilize the Remote Viewer as it provided improved usability. The following page provides instructions for several operating systems. Windows: Install https://virt-manager.org/download/sources/virt-viewer/virt-viewer-x64-8.0.msi Mac OS: Install homebrew the missing package manager for Mac OS X. (https://brew.sh/)…
Posted in How-To-Guides
Password Sync
If you have changed your NETID password you will need to sync it up by visiting https://access.hpc.fau.edu/rc. This tool will push the password to any Research Computing systems that you have access to.
Posted in How-To-Guides, Support Posts
Running RStudio
RStudio is an Integrated Development Environment (IDE) for R. It includes a console, syntax highlighting editor that supports direct code execution, as well as tools for plotting, debugging, history and workspace management. For more information see RStudio webpage. To run RStudio, first open…
Posted in How-To-Guides, HPC
Miniconda (small anaconda)
For researchers who have Python or R package requirements beyond the common packages (e.g. Numby, Scipy, Pandas, BioConda, R) we recommend using Anaconda. Using Anaconda’s package manager allows the creation and management of packages and environments. Using conda you can…
Posted in How-To-Guides
Running Jupyter with SciKit-learn
For more information on Scikit check out (https://scikit-learn.org/) First start your Jupyter server using the short process: Open https://notebooks.hpc.fau.edu Click “Login” Click “Login to Jupyter” Enter your username and password. Click “Login” Click “New Server” Click “New” -> “Terminal” Enter…
Posted in How-To-Guides
Linux VPN
Florida Atlantic University VPN for Linux For Linux, the Juniper Network Connect client has been deprecated VPN connectivity can be accomplished through use of the Pulse Secure Client for Linux. Currently only Centos/RHEL and Debian/Ubuntu flavors of Linux are supported by the…
Posted in How-To-Guides
Sample SBATCH script
Jobs can be submitted to Koko through two methods, SRUN and SBATCH scripts. We have listed a few sample SBATCH scripts to assist users in building their own scripts to submit jobs. Please see our website here for partition information.…
Posted in How-To-Guides, Support Posts
Matlab Individual Installation Instructions
Downloading the MATLAB installer: Log into the MathWorks website here. Select ‘Get started today’ under the Download MATLAB section. Login with your FAU NetID and password. If you have a MathWorks account, click ‘Log In’ under the Log in to…
Posted in Academic Resources, How-To-Guides
Matlab Installation and Licensing
WARNING: This guide is not intended for student or individual installations of Matlab. Please refer to the MathWorks website here for installation instructions for students or individual systems. To install Matlab on your Windows or Linux system, please use the…
